PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029743.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 97aa    MW: 11359.2 Da    PI: 10.3924
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029743.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54e-076181626
                -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                C+++  +G C +Gd C+F+H+
  Do029743.1 61 CHNYKNNGMCIRGDGCRFSHV 81
                ********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.9445583IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-55981IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-46180IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
RLPTLGRREN ALWQKRGKIK RRQISASSPM ILHLQQNLCP ATILRVSSCL KGDDIPYDQS  60
CHNYKNNGMC IRGDGCRFSH VVYVNYRRYF QTRCKDI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1622RRENALWQKRGKIKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743